Index

_

__call__() (openTSNE.callbacks.Callback method)

A

Affinities (class in openTSNE.affinity)

C

Callback (class in openTSNE.callbacks)

check_perplexities() (openTSNE.affinity.MultiscaleMixture method) check_perplexity() (openTSNE.affinity.PerplexityBasedNN static method)

F

fit() (openTSNE.sklearn.TSNE method) (openTSNE.TSNE method)

fit_transform() (openTSNE.sklearn.TSNE method) FixedSigmaNN (class in openTSNE.affinity)

G

GammaSmoothedPerplexityNN (class in openTSNE.affinity)

J

jitter() (in module openTSNE.initialization)

K

kl_divergence (openTSNE.PartialTSNEEmbedding attribute) (openTSNE.TSNEEmbedding attribute)

M

module openTSNE openTSNE.affinity openTSNE.callbacks openTSNE.initialization openTSNE.sklearn

Multiscale (class in openTSNE.affinity) MultiscaleMixture (class in openTSNE.affinity)

N

n_samples (openTSNE.affinity.Affinities property)

O

openTSNE module openTSNE.affinity module openTSNE.callbacks module openTSNE.initialization module

openTSNE.sklearn module optimization_about_to_start() (openTSNE.callbacks.Callback method) OptimizationInterrupt optimize() (openTSNE.PartialTSNEEmbedding method) (openTSNE.TSNEEmbedding method)

P

P (openTSNE.affinity.Affinities attribute) PartialTSNEEmbedding (class in openTSNE) pca() (in module openTSNE.initialization) PerplexityBasedNN (class in openTSNE.affinity)

PrecomputedAffinities (class in openTSNE.affinity) prepare_initial() (openTSNE.TSNE method) prepare_interpolation_grid() (openTSNE.TSNEEmbedding method) prepare_partial() (openTSNE.TSNEEmbedding method)

R

random() (in module openTSNE.initialization)

rescale() (in module openTSNE.initialization)

S

set_fit_request() (openTSNE.sklearn.TSNE method) (openTSNE.TSNE method)

set_perplexities() (openTSNE.affinity.MultiscaleMixture method) set_perplexity() (openTSNE.affinity.PerplexityBasedNN method) spectral() (in module openTSNE.initialization)

T

to_new() (openTSNE.affinity.Affinities method) (openTSNE.affinity.FixedSigmaNN method) (openTSNE.affinity.MultiscaleMixture method) (openTSNE.affinity.PerplexityBasedNN method) (openTSNE.affinity.PrecomputedAffinities method) (openTSNE.affinity.Uniform method)

transform() (openTSNE.sklearn.TSNE method) (openTSNE.TSNEEmbedding method) TSNE (class in openTSNE) (class in openTSNE.sklearn) TSNEEmbedding (class in openTSNE)

U

Uniform (class in openTSNE.affinity)

V

verbose (openTSNE.affinity.Affinities attribute)